Overview of PhenoPath | The PhenoPath model | Mean-field variational inference | Example on simulated data | Simulating data | Fit PhenoPath model | Examining results | Advanced | Using an SummarizedExperiment as input | Initialisation of latent space | Controlling variational inference | Technical | References

Introduction | Installation | Pre-filtering of genes | Example usage | Non-zero inflated | Zero-inflation | Controlling the EM algorithm | Use cases | Technical info