switchde - Switch-like differential expression across single-cell trajectories

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Last updated 5 months ago

immunooncologysoftwaretranscriptomicsgeneexpressionrnaseqregressiondifferentialexpressionsinglecellgene-expressiongenomicssingle-cell

19 stars 5.98 score 57 dependencies

mfa - Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcations

MFA models genomic bifurcations using a Bayesian hierarchical mixture of factor analysers.

Last updated 5 months ago

immunooncologyrnaseqgeneexpressionbayesiansinglecell

4.85 score 62 dependencies

phenopath - Genomic trajectories with heterogeneous genetic and environmental backgrounds

PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.

Last updated 5 months ago

immunooncologyrnaseqgeneexpressionbayesiansinglecellprincipalcomponent

4.63 score 62 dependencies